Oh I did in fact put the folders in the wrong place. Sorry about that! I put them in the correct place and re-ran the SURT. I then had a quick look at the log and it seemed to have fixed a bunch of problems so I tried running windows update again. I managed to install 1 out of 2 updates, but the service pack install still failed. I've copy pasted the SURT log below along with 2 screenshots of the error on my windows update:
===========================
Checking System Update Readiness.
Binary Version 6.1.7601.21645
Package Version 19.0
2013-08-08 13:15
Checking Windows Servicing Packages
Checking Package Manifests and Catalogs
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_120_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_120_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_120_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_121_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_121_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_121_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_122_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_122_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_122_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_123_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_123_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_123_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_16_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_16_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_16_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_38_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_38_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_38_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_40_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_40_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_40_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_41_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_41_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_41_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_88_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_88_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_88_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_90_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_90_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_90_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_94_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_94_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_94_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_98_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_98_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_98_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(f) CBS MUM Corrupt 0x800F0900 servicing\Packages\Package_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum Line 1:
(fix) CBS MUM Corrupt CBS File Replaced Package_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.mum from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
(fix) CBS Paired File CBS File also Replaced Package_for_KB2813347~31bf3856ad364e35~amd64~~6.1.1.0.cat from Cabinet: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab.
Checking Package Watchlist
Checking Component Watchlist
Checking Packages
Checking Component Store
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_it-it_5d1932738354dd5e.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_it-it_5d1932738354dd5e
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_it-it_5d1932738354dd5e.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.21448_none_8c9abff4f853d2d0.manifest amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.21448_none_8c9abff4f853d2d0
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.21448_none_8c9abff4f853d2d0.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_fr-fr_74c6c78aa956e7b3.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_fr-fr_74c6c78aa956e7b3
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_fr-fr_74c6c78aa956e7b3.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.18079_none_8dd80ecfdc740ef5.manifest amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.18079_none_8dd80ecfdc740ef5
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.18079_none_8dd80ecfdc740ef5.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_fr-fr_72f13c2cac22f7e0.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_fr-fr_72f13c2cac22f7e0
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_fr-fr_72f13c2cac22f7e0.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_de-de_277d9350ca4be414.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_de-de_277d9350ca4be414
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_de-de_277d9350ca4be414.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.17233_none_8c16efbddf329b3b.manifest amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.17233_none_8c16efbddf329b3b
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7600.17233_none_8c16efbddf329b3b.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_en-us_d06e6949b929efd9.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_en-us_d06e6949b929efd9
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7600.21448_en-us_d06e6949b929efd9.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.22252_none_8e704b52f587c2a3.manifest amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.22252_none_8e704b52f587c2a3
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..s-clientactivexcore_31bf3856ad364e35_6.1.7601.22252_none_8e704b52f587c2a3.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_de-de_29531eaec77fd3e7.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_de-de_29531eaec77fd3e7
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_de-de_29531eaec77fd3e7.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_en-us_d243f4a7b65ddfac.manifest amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_en-us_d243f4a7b65ddfac
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..tivexcore.resources_31bf3856ad364e35_6.1.7601.22252_en-us_d243f4a7b65ddfac.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7600.21448_none_8311f2f50fedd5c3.manifest amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7600.21448_none_8311f2f50fedd5c3
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7600.21448_none_8311f2f50fedd5c3.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7600.21448_none_aa8905cd53c32c51.manifest amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7600.21448_none_aa8905cd53c32c51
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7600.21448_none_aa8905cd53c32c51.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7601.22252_none_84e77e530d21c596.manifest amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7601.22252_none_84e77e530d21c596
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..es-workspaceruntime_31bf3856ad364e35_6.1.7601.22252_none_84e77e530d21c596.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
(f) CSI Manifest All Zeros 0x00000000 winsxs\Manifests\amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7601.22252_none_ac5e912b50f71c24.manifest amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7601.22252_none_ac5e912b50f71c24
(fix) CSI Manifest All Zeros CSI File Replaced File: amd64_microsoft-windows-t..minalservicesclient_31bf3856ad364e35_6.1.7601.22252_none_ac5e912b50f71c24.manifest From: C:\Windows\CheckSur\v1.0\windows6.1-7601-x64-clientcab1.cab
Summary:
Seconds executed: 972
Found 28 errors
Fixed 28 errors
CSI Manifest All Zeros Total count: 15
Fixed: CSI Manifest All Zeros. Total count: 15
CBS MUM Corrupt Total count: 13
Fixed: CBS MUM Corrupt. Total count: 13
Fixed: CBS Paired File. Total count: 13
Customer Experience report successfully uploaded. Thank you for participating. For more information, see the Microsoft Customer Experience Improvement Program on the Microsoft web site.
Thanks!