I have already removed the following as best as i could - Pulse Secure, AI Suite II and Daemon Tools. DT was especially problematic as that came from Win7, and the installer isn't even starting on Win10. Unfortunately, some pieces of them still remains in registry and I not sure how to remove those. Vigem and X-Rite I have added after 2-3 weeks of failed upgrade attempts. Cheat Engine doesn't install service or a driver (as far as i know). Also, up until last week all of my non-MS services were disabled, but funny enough MS engineer re-enabled them for some reason.
Also, I'm not sure if any of those programs can affect the Safe OS stage.